Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H5405_RS08855 Genome accession   NZ_CP060085
Coordinates   1755431..1756039 (-) Length   202 a.a.
NCBI ID   WP_029326130.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750431..1761039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS08835 (H5405_08835) dnaD 1750667..1751365 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  H5405_RS08840 (H5405_08840) nth 1751384..1752043 (+) 660 WP_007612187.1 endonuclease III -
  H5405_RS08845 (H5405_08845) - 1752040..1752531 (+) 492 WP_007612186.1 YpoC family protein -
  H5405_RS08850 (H5405_08850) - 1752609..1755392 (-) 2784 WP_007612185.1 PBP1A family penicillin-binding protein -
  H5405_RS08855 (H5405_08855) recU 1755431..1756039 (-) 609 WP_029326130.1 Holliday junction resolvase RecU Machinery gene
  H5405_RS08860 (H5405_08860) - 1756081..1757043 (+) 963 WP_007612183.1 DUF2515 domain-containing protein -
  H5405_RS08865 (H5405_08865) sspM 1757087..1757191 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  H5405_RS08870 (H5405_08870) - 1757397..1757642 (+) 246 WP_007612178.1 DUF5446 family protein -
  H5405_RS08875 (H5405_08875) - 1757688..1758056 (+) 369 WP_029326132.1 YppE family protein -
  H5405_RS08880 (H5405_08880) - 1758095..1758277 (-) 183 WP_003153532.1 YppF family protein -
  H5405_RS08885 (H5405_08885) - 1758464..1758931 (+) 468 WP_007612172.1 YppG family protein -
  H5405_RS08890 (H5405_08890) - 1758961..1759374 (-) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  H5405_RS08895 (H5405_08895) - 1759513..1760019 (+) 507 WP_007612167.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23638.74 Da        Isoelectric Point: 9.5708

>NTDB_id=473801 H5405_RS08855 WP_029326130.1 1755431..1756039(-) (recU) [Bacillus velezensis strain HAB-2]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVKQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=473801 H5405_RS08855 WP_029326130.1 1755431..1756039(-) (recU) [Bacillus velezensis strain HAB-2]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGATCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAAACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891