Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   H5405_RS07790 Genome accession   NZ_CP060085
Coordinates   1509460..1510260 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain HAB-2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504460..1515260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS07770 (H5405_07770) - 1504582..1505427 (+) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  H5405_RS07775 (H5405_07775) ahrC 1505524..1505973 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  H5405_RS07780 (H5405_07780) recN 1506005..1507735 (+) 1731 WP_007612501.1 DNA repair protein RecN Machinery gene
  H5405_RS07785 (H5405_07785) spoIVB 1507899..1509179 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  H5405_RS07790 (H5405_07790) spo0A 1509460..1510260 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  H5405_RS07795 (H5405_07795) alr 1510409..1511590 (-) 1182 WP_007612500.1 alanine racemase -
  H5405_RS07800 (H5405_07800) - 1511767..1511979 (-) 213 WP_007612499.1 spore germination protein -
  H5405_RS07805 (H5405_07805) - 1512105..1512317 (-) 213 WP_007408362.1 spore germination protein -
  H5405_RS07810 (H5405_07810) - 1512444..1513562 (-) 1119 WP_029326082.1 NADH-dependent flavin oxidoreductase -
  H5405_RS07815 (H5405_07815) - 1513656..1513793 (-) 138 WP_014470646.1 hypothetical protein -
  H5405_RS07820 (H5405_07820) - 1514090..1514722 (-) 633 WP_014418348.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=473800 H5405_RS07790 WP_003153177.1 1509460..1510260(+) (spo0A) [Bacillus velezensis strain HAB-2]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=473800 H5405_RS07790 WP_003153177.1 1509460..1510260(+) (spo0A) [Bacillus velezensis strain HAB-2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATTTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTTATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97