Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H5405_RS07285 Genome accession   NZ_CP060085
Coordinates   1424214..1424981 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain HAB-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1419214..1429981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS07255 (H5405_07255) - 1419497..1421629 (+) 2133 WP_007612656.1 HD family phosphohydrolase -
  H5405_RS07260 (H5405_07260) ybeY 1421630..1422103 (+) 474 WP_007612655.1 rRNA maturation RNase YbeY -
  H5405_RS07265 (H5405_07265) - 1422084..1422458 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  H5405_RS07270 (H5405_07270) - 1422582..1422992 (+) 411 WP_003152976.1 cytidine deaminase -
  H5405_RS07275 (H5405_07275) era 1422973..1423878 (+) 906 WP_007612653.1 GTPase Era -
  H5405_RS07280 (H5405_07280) - 1424034..1424177 (+) 144 WP_007408286.1 YqzL family protein -
  H5405_RS07285 (H5405_07285) recO 1424214..1424981 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  H5405_RS07290 (H5405_07290) glyQ 1425283..1426170 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  H5405_RS07295 (H5405_07295) glyS 1426163..1428202 (+) 2040 WP_007612651.1 glycine--tRNA ligase subunit beta -
  H5405_RS07300 (H5405_07300) ccpN 1428303..1428941 (+) 639 WP_007612649.1 transcriptional regulator CcpN -
  H5405_RS07305 (H5405_07305) - 1428967..1429779 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=473791 H5405_RS07285 WP_007408287.1 1424214..1424981(+) (recO) [Bacillus velezensis strain HAB-2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=473791 H5405_RS07285 WP_007408287.1 1424214..1424981(+) (recO) [Bacillus velezensis strain HAB-2]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAGCGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89