Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   H5405_RS06485 Genome accession   NZ_CP060085
Coordinates   1275791..1276543 (+) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain HAB-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270791..1281543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS06470 (H5405_06470) - 1271014..1271205 (-) 192 WP_007612879.1 hypothetical protein -
  H5405_RS06475 (H5405_06475) - 1271658..1274300 (+) 2643 WP_007612877.1 valine--tRNA ligase -
  H5405_RS06480 (H5405_06480) - 1274359..1275651 (+) 1293 WP_007612876.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  H5405_RS06485 (H5405_06485) comC 1275791..1276543 (+) 753 WP_012118107.1 A24 family peptidase Machinery gene
  H5405_RS06490 (H5405_06490) - 1276670..1277671 (+) 1002 WP_029326047.1 SPOR domain-containing protein -
  H5405_RS06495 (H5405_06495) - 1277812..1278381 (+) 570 WP_029326048.1 nucleoside triphosphate pyrophosphatase -
  H5405_RS06500 (H5405_06500) radC 1278413..1279108 (+) 696 WP_007408165.1 DNA repair protein RadC -
  H5405_RS06505 (H5405_06505) mreB 1279200..1280213 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  H5405_RS06510 (H5405_06510) mreC 1280244..1281107 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=473784 H5405_RS06485 WP_012118107.1 1275791..1276543(+) (comC) [Bacillus velezensis strain HAB-2]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=473784 H5405_RS06485 WP_012118107.1 1275791..1276543(+) (comC) [Bacillus velezensis strain HAB-2]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGTCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584