Detailed information NTG0473707

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JTF63_RS04825
• Genome accession: NZ_CP070232
• Coordinates: 1008324..1009316 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 10R
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1003324..1014316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JTF63_RS04795 (JTF63_04795)	ispD	1003385..1004095 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JTF63_RS04800 (JTF63_04800)	ispF	1004095..1004574 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JTF63_RS04805 (JTF63_04805)	truD	1004571..1005620 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JTF63_RS04810 (JTF63_04810)	surE	1005601..1006362 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JTF63_RS04815 (JTF63_04815)	pcm	1006356..1006982 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JTF63_RS04820 (JTF63_04820)	nlpD	1007167..1008261 (+)	1095	WP_306433997.1	murein hydrolase activator NlpD	-
JTF63_RS04825 (JTF63_04825)	rpoS	1008324..1009316 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JTF63_RS04830 (JTF63_04830)	ygbN	1009410..1010774 (-)	1365	WP_000104441.1	GntP family transporter	-
JTF63_RS04835 (JTF63_04835)	ygbM	1010863..1011639 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JTF63_RS04840 (JTF63_04840)	ygbL	1011644..1012282 (-)	639	WP_001278994.1	aldolase	-
JTF63_RS04845 (JTF63_04845)	otnK	1012279..1013541 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=473707 JTF63_RS04825 WP_000081550.1 1008324..1009316(+) (rpoS) [Escherichia coli strain 10R]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=473707 JTF63_RS04825 WP_000081550.1 1008324..1009316(+) (rpoS) [Escherichia coli strain 10R]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715