Detailed information NTG0473674

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JTC67_RS20510
• Genome accession: NZ_CP070229
• Coordinates: 4073321..4074313 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4068321..4079313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JTC67_RS20480 (JTC67_20300)	ispD	4068382..4069092 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JTC67_RS20485 (JTC67_20305)	ispF	4069092..4069571 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JTC67_RS20490 (JTC67_20310)	truD	4069568..4070617 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
JTC67_RS20495 (JTC67_20315)	surE	4070598..4071359 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JTC67_RS20500 (JTC67_20320)	pcm	4071353..4071979 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
JTC67_RS20505 (JTC67_20325)	nlpD	4072164..4073258 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JTC67_RS20510 (JTC67_20330)	rpoS	4073321..4074313 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JTC67_RS20515 (JTC67_20335)	-	4074491..4075042 (-)	552	WP_001179443.1	flavodoxin family protein	-
JTC67_RS20520 (JTC67_20340)	-	4075267..4076310 (+)	1044	WP_024240246.1	MBL fold metallo-hydrolase	-
JTC67_RS20525 (JTC67_20345)	ygbN	4076453..4077817 (-)	1365	WP_000104433.1	GntP family transporter	-
JTC67_RS20530 (JTC67_20350)	ygbM	4077906..4078682 (-)	777	WP_001357575.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=473674 JTC67_RS20510 WP_000081550.1 4073321..4074313(+) (rpoS) [Escherichia coli strain EC12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=473674 JTC67_RS20510 WP_000081550.1 4073321..4074313(+) (rpoS) [Escherichia coli strain EC12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715