Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H6S61_RS15285 Genome accession   NZ_CP060047
Coordinates   3159691..3161112 (-) Length   473 a.a.
NCBI ID   WP_038969568.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3154691..3166112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS15255 (H6S61_15255) - 3155099..3155866 (+) 768 WP_011080632.1 phospholipase A -
  H6S61_RS15260 (H6S61_15260) - 3156105..3156509 (+) 405 WP_011080631.1 hypothetical protein -
  H6S61_RS15265 (H6S61_15265) - 3156583..3157686 (-) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  H6S61_RS15270 (H6S61_15270) - 3157889..3158281 (-) 393 WP_118893801.1 hypothetical protein -
  H6S61_RS15275 (H6S61_15275) - 3158594..3159271 (-) 678 WP_038963115.1 LrgB family protein -
  H6S61_RS15280 (H6S61_15280) - 3159274..3159645 (-) 372 WP_045588948.1 CidA/LrgA family protein -
  H6S61_RS15285 (H6S61_15285) sbcB 3159691..3161112 (-) 1422 WP_038969568.1 exodeoxyribonuclease I Machinery gene
  H6S61_RS15290 (H6S61_15290) - 3161186..3161884 (-) 699 WP_185890974.1 oxidoreductase -
  H6S61_RS15295 (H6S61_15295) cobT 3162415..3163443 (+) 1029 WP_130252719.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  H6S61_RS15300 (H6S61_15300) - 3163445..3164212 (+) 768 WP_185890976.1 adenosylcobinamide-GDP ribazoletransferase -
  H6S61_RS15305 (H6S61_15305) cobU 3164215..3164775 (+) 561 WP_185890979.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  H6S61_RS15310 (H6S61_15310) cobC 3164785..3165423 (+) 639 WP_185890981.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54753.98 Da        Isoelectric Point: 5.1722

>NTDB_id=473568 H6S61_RS15285 WP_038969568.1 3159691..3161112(-) (sbcB) [Vibrio vulnificus strain 2497-87]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKIAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=473568 H6S61_RS15285 WP_038969568.1 3159691..3161112(-) (sbcB) [Vibrio vulnificus strain 2497-87]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAGCCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGACCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTGTCGGTGGCGAATGGCATTGAACACAGTAACGCGCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTTTTTAGCATGCGCCATAAGCGTA
AACTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATTGTGCCATTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGACTTACTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGCTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.508

99.789

0.803