Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   H6S61_RS13970 Genome accession   NZ_CP060047
Coordinates   2864636..2866036 (+) Length   466 a.a.
NCBI ID   WP_080538130.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2859636..2871036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS13950 (H6S61_13950) rsxB 2860241..2860837 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  H6S61_RS13955 (H6S61_13955) rsxA 2860839..2861417 (-) 579 WP_185890833.1 electron transport complex subunit RsxA -
  H6S61_RS13965 (H6S61_13965) uvrB 2862298..2864328 (+) 2031 WP_013572115.1 excinuclease ABC subunit UvrB -
  H6S61_RS13970 (H6S61_13970) luxO 2864636..2866036 (+) 1401 WP_080538130.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  H6S61_RS13975 (H6S61_13975) luxU 2866036..2866383 (+) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  H6S61_RS13980 (H6S61_13980) - 2866484..2867374 (-) 891 WP_017790689.1 YvcK family protein -
  H6S61_RS13985 (H6S61_13985) moaA 2867689..2868678 (+) 990 WP_039547572.1 GTP 3',8-cyclase MoaA -
  H6S61_RS13990 (H6S61_13990) moaB 2868757..2869269 (+) 513 WP_017428876.1 molybdenum cofactor biosynthesis protein B -
  H6S61_RS13995 (H6S61_13995) moaC 2869280..2869759 (+) 480 WP_017428877.1 cyclic pyranopterin monophosphate synthase MoaC -
  H6S61_RS14000 (H6S61_14000) moaD 2869756..2870001 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  H6S61_RS14005 (H6S61_14005) moaE 2870003..2870458 (+) 456 WP_185890835.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52136.68 Da        Isoelectric Point: 6.2540

>NTDB_id=473564 H6S61_RS13970 WP_080538130.1 2864636..2866036(+) (luxO) [Vibrio vulnificus strain 2497-87]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDSDSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=473564 H6S61_RS13970 WP_080538130.1 2864636..2866036(+) (luxO) [Vibrio vulnificus strain 2497-87]
ATGCAACAAATAACGACAACGAAACAACGCTACTTGCTGATGGTAGAAGACACTGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGACTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGCCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCAATCGATACCGCTGTTGAAGCAATGCGACACGGATCGCAAGATTT
CTTGATCAAACCCTGTGAAGCTGACCGACTCAGGGTCACGGTGAACAACGCTATCCGCAAGGCGAGCAAGCTAAAAAATG
ATTCAGACAGCGCCGGAAGTCAGAATTATCAAGGCTTTATCGGCAGTAGTCAAAAAATGCAGCAGGTCTATCGAACCATT
GACTCGGCGGCCAGTAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCAGCCAGTCGACGCGGAGACAAGCCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGGCATGTCAAAGGTGCGTTTACTGGCGCAGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCCGACGGAGGC
ACACTGTTCCTTGATGAGCTGTGTGAAATGGACCTAGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGCTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAAG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAATGGTAAAGAGATTACCATGGAGATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTGGATGTCAGCCCGTCAACGATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.714

96.137

0.824