Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   H6S61_RS06150 Genome accession   NZ_CP060047
Coordinates   1217140..1217658 (-) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus strain 2497-87     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212140..1222658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS06125 (H6S61_06125) rimM 1212232..1212780 (-) 549 WP_038941427.1 ribosome maturation factor RimM -
  H6S61_RS06130 (H6S61_06130) rpsP 1212796..1213044 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  H6S61_RS06135 (H6S61_06135) ffh 1213333..1214709 (-) 1377 WP_011079540.1 signal recognition particle protein -
  H6S61_RS06140 (H6S61_06140) - 1214923..1215717 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  H6S61_RS06145 (H6S61_06145) - 1215804..1217081 (+) 1278 WP_038941428.1 CNNM domain-containing protein -
  H6S61_RS06150 (H6S61_06150) luxS 1217140..1217658 (-) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  H6S61_RS06155 (H6S61_06155) - 1217709..1218341 (-) 633 WP_185891874.1 hypothetical protein -
  H6S61_RS06160 (H6S61_06160) gshA 1218352..1219917 (-) 1566 WP_095430311.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=473536 H6S61_RS06150 WP_017421185.1 1217140..1217658(-) (luxS) [Vibrio vulnificus strain 2497-87]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=473536 H6S61_RS06150 WP_017421185.1 1217140..1217658(-) (luxS) [Vibrio vulnificus strain 2497-87]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGCTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGCACCGCGGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAGCTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872