Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SY91_RS00565 Genome accession   NZ_CP060039
Coordinates   120742..122247 (+) Length   501 a.a.
NCBI ID   WP_034174400.1    Uniprot ID   -
Organism   Burkholderia cenocepacia strain PS27     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115742..127247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SY91_RS00540 (SY91_00108) kdsD 116976..117959 (+) 984 WP_006483136.1 arabinose 5-phosphate isomerase KdsD -
  SY91_RS00545 (SY91_00109) - 117959..118495 (+) 537 WP_006477791.1 KdsC family phosphatase -
  SY91_RS00550 (SY91_00110) lptC 118499..119113 (+) 615 WP_006477790.1 LPS export ABC transporter periplasmic protein LptC -
  SY91_RS00555 (SY91_00111) lptA 119134..119796 (+) 663 WP_185921001.1 lipopolysaccharide transport periplasmic protein LptA -
  SY91_RS00560 (SY91_00112) lptB 119793..120569 (+) 777 WP_006477788.1 LPS export ABC transporter ATP-binding protein -
  SY91_RS00565 (SY91_00113) rpoN/rpoN1 120742..122247 (+) 1506 WP_034174400.1 RNA polymerase factor sigma-54 Machinery gene
  SY91_RS00570 (SY91_00114) hpf 122406..122765 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SY91_RS00575 (SY91_00115) - 122960..123472 (+) 513 WP_027806888.1 PTS sugar transporter subunit IIA -
  SY91_RS00580 (SY91_00116) hprK 123602..124570 (+) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  SY91_RS00585 (SY91_00117) rapZ 124645..125553 (+) 909 WP_124477314.1 RNase adapter RapZ -
  SY91_RS00590 (SY91_00118) - 125581..126216 (+) 636 WP_011546241.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54785.88 Da        Isoelectric Point: 4.8740

>NTDB_id=473514 SY91_RS00565 WP_034174400.1 120742..122247(+) (rpoN/rpoN1) [Burkholderia cenocepacia strain PS27]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPAQNTEPTA
TNGSSTSSDRAERDEPAGADEYDGYGSGDGNDGPQWNLDEYGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLTATLDEVLADLPPELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVVP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=473514 SY91_RS00565 WP_034174400.1 120742..122247(+) (rpoN/rpoN1) [Burkholderia cenocepacia strain PS27]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATCTTGCGCTGACGCCTCAGCTGCAGCAGTCGATCCGGCTCCTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAGAACGACGACGAATGGA
TCGCCAGCCCGCTGCGCGTCGCGGCGGACGGATCGCTGATCGCGCAGACGCCGCCCGCACAGAACACCGAGCCCACCGCG
ACCAACGGCAGCAGCACGTCCAGCGATCGCGCCGAGCGCGACGAGCCGGCCGGCGCCGACGAATACGACGGTTACGGGTC
CGGTGACGGCAACGACGGCCCGCAGTGGAATCTCGACGAATACGGCCGCTCGAGCGGTGCGTCCGACGACGACGACCTGC
CGCCGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGATCATCTCTCGGCGCAGTTGCGCGTCACGCAGGCCGGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCCACGCTCGACGAAGTGCT
CGCCGACCTGCCGCCCGAACTGGAAATCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGACCCGG
CCGGCGTCGGCGCGCGCTCGGCCTCGGAATGCCTGAAGCTGCAGCTGCTGCGTCTCGATCCGTCCCCCACGCGCACGCTC
GCGCTCGAGATCGTGTCGCAGCATCTCGAATTGCTCGCCGCACGCGACTTCACCCGGTTGCGCAAGCACCTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCCGCCTACGGCAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGATGGCTCGCGGAGCTCAATCCGGAGGTCGTCCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCCGGATCGTTGAAACAGCA
GCTGCAGGAAGCGCGCTGGTTGATCAAGAACATCCAGCAGCGTTTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCG
AGCGTCAGAAGAATTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGGAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCTCACGTCTCGACCGACACCGGTGGCGCCGCCTCGTCGACCGCCATCCGAGCCCTCATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTGGTCGCGCGC
CGCACGGTTGCGAAATATCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.182

100

0.689