Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H4B47_RS07220 Genome accession   NZ_CP060029
Coordinates   1477430..1478071 (+) Length   213 a.a.
NCBI ID   WP_000201225.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472430..1483071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B47_RS07200 (H4B47_07220) - 1472478..1472810 (+) 333 WP_000169604.1 hypothetical protein -
  H4B47_RS07205 (H4B47_07225) - 1472813..1473637 (+) 825 WP_086223954.1 putative RNA methyltransferase -
  H4B47_RS07210 (H4B47_07230) ponA 1473655..1476210 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  H4B47_RS07215 (H4B47_07235) pilM 1476372..1477430 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  H4B47_RS07220 (H4B47_07240) pilN 1477430..1478071 (+) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  H4B47_RS07225 (H4B47_07245) pilO 1478068..1478808 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H4B47_RS07230 (H4B47_07250) pilP 1478819..1479346 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  H4B47_RS07235 (H4B47_07255) pilQ 1479409..1481574 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H4B47_RS07240 (H4B47_07260) aroK 1481586..1482155 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=473446 H4B47_RS07220 WP_000201225.1 1477430..1478071(+) (pilN) [Acinetobacter baumannii strain AbCTX1]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFAIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=473446 H4B47_RS07220 WP_000201225.1 1477430..1478071(+) (pilN) [Acinetobacter baumannii strain AbCTX1]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTGCGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704