Detailed information NTG0473392

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K13_RS16675
• Genome accession: NZ_CP070162
• Coordinates: 3405399..3406391 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1283
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3400399..3411391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K13_RS16655 (I6K13_16650)	ygbM	3401030..3401806 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
I6K13_RS16660 (I6K13_16655)	ygbN	3401895..3403259 (+)	1365	WP_000104433.1	GntP family transporter	-
I6K13_RS16665 (I6K13_16660)	-	3403402..3404445 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6K13_RS16670 (I6K13_16665)	-	3404670..3405221 (+)	552	WP_001179442.1	flavodoxin family protein	-
I6K13_RS16675 (I6K13_16670)	rpoS	3405399..3406391 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K13_RS16680 (I6K13_16675)	nlpD	3406454..3407548 (-)	1095	WP_349251386.1	murein hydrolase activator NlpD	-
I6K13_RS16685 (I6K13_16680)	pcm	3407733..3408359 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6K13_RS16690 (I6K13_16685)	surE	3408353..3409114 (-)	762	WP_016247751.1	5'/3'-nucleotidase SurE	-
I6K13_RS16695 (I6K13_16690)	truD	3409095..3410144 (-)	1050	WP_021524450.1	tRNA pseudouridine(13) synthase TruD	-
I6K13_RS16700 (I6K13_16695)	ispF	3410141..3410620 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K13_RS16705 (I6K13_16700)	ispD	3410620..3411330 (-)	711	WP_021524451.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=473392 I6K13_RS16675 WP_000081550.1 3405399..3406391(-) (rpoS) [Escherichia coli strain FDAARGOS_1283]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=473392 I6K13_RS16675 WP_000081550.1 3405399..3406391(-) (rpoS) [Escherichia coli strain FDAARGOS_1283]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715