Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   H5028_RS17400 Genome accession   NZ_CP060013
Coordinates   3683108..3684262 (+) Length   384 a.a.
NCBI ID   WP_029424585.1    Uniprot ID   A0A2G8V6K8
Organism   Acinetobacter baumannii strain TP3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678108..3689262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5028_RS17375 (H5028_17360) - 3678259..3679473 (+) 1215 WP_029424583.1 oxygenase MpaB family protein -
  H5028_RS17380 (H5028_17365) - 3679543..3679749 (-) 207 WP_000182542.1 hypothetical protein -
  H5028_RS17385 (H5028_17370) - 3679803..3681917 (-) 2115 WP_029424584.1 TonB-dependent copper receptor -
  H5028_RS17390 (H5028_17375) - 3681990..3682418 (-) 429 WP_000231981.1 DUF2946 family protein -
  H5028_RS17395 (H5028_17380) def 3682455..3682985 (-) 531 WP_001196539.1 peptide deformylase -
  H5028_RS17400 (H5028_17385) tsaP 3683108..3684262 (+) 1155 WP_029424585.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H5028_RS17405 (H5028_17390) dprA 3684283..3685413 (+) 1131 WP_002013158.1 DNA-processing protein DprA Machinery gene
  H5028_RS17410 (H5028_17395) - 3685464..3686033 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  H5028_RS17415 (H5028_17400) - 3686425..3687345 (-) 921 WP_086221561.1 DMT family transporter -
  H5028_RS17420 (H5028_17405) - 3687451..3688101 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42422.39 Da        Isoelectric Point: 8.5909

>NTDB_id=473382 H5028_RS17400 WP_029424585.1 3683108..3684262(+) (tsaP) [Acinetobacter baumannii strain TP3]
MKKVFDGMVNFHALGIKKHLLALALCTGVVIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRRLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAFVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=473382 H5028_RS17400 WP_029424585.1 3683108..3684262(+) (tsaP) [Acinetobacter baumannii strain TP3]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGTAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTGAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCGTTTAGTCGGTAAAGATGAGGGGGATGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAAGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACCCAAGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTTTGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8V6K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.438

100

0.984