Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K13_RS13130 Genome accession   NZ_CP070162
Coordinates   2640867..2642294 (+) Length   475 a.a.
NCBI ID   WP_021524295.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1283     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2635867..2647294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K13_RS13100 (I6K13_13095) pduU 2636245..2636595 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  I6K13_RS13105 (I6K13_13100) - 2636600..2637043 (+) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  I6K13_RS13110 (I6K13_13105) tmaR 2637143..2637472 (-) 330 WP_000450409.1 DUF496 family protein -
  I6K13_RS13115 (I6K13_13110) yeeA 2637644..2638702 (-) 1059 WP_001200890.1 FUSC family protein -
  I6K13_RS13120 (I6K13_13115) sbmC 2638900..2639373 (-) 474 WP_021524294.1 DNA gyrase inhibitor SbmC -
  I6K13_RS13125 (I6K13_13120) dacD 2639492..2640658 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K13_RS13130 (I6K13_13125) sbcB 2640867..2642294 (+) 1428 WP_021524295.1 exodeoxyribonuclease I Machinery gene
  I6K13_RS13135 (I6K13_13130) plaP 2642368..2643726 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6K13_RS13140 (I6K13_13135) yoeI 2643716..2643778 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6K13_RS13145 (I6K13_13140) yeeY 2643993..2644922 (-) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  I6K13_RS13150 (I6K13_13145) yeeZ 2644968..2645792 (-) 825 WP_021524296.1 SDR family oxidoreductase -
  I6K13_RS13155 (I6K13_13150) yoeB 2645875..2646129 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6K13_RS13160 (I6K13_13155) yefM 2646126..2646377 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6K13_RS13165 (I6K13_13160) hisL 2646660..2646710 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=473379 I6K13_RS13130 WP_021524295.1 2640867..2642294(+) (sbcB) [Escherichia coli strain FDAARGOS_1283]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLQALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=473379 I6K13_RS13130 WP_021524295.1 2640867..2642294(+) (sbcB) [Escherichia coli strain FDAARGOS_1283]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACAGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583