Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H5028_RS16905 Genome accession   NZ_CP060013
Coordinates   3578959..3579285 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain TP3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3573959..3584285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5028_RS16885 (H5028_16870) - 3574067..3574696 (-) 630 WP_000219964.1 FHA domain-containing protein -
  H5028_RS16890 (H5028_16875) gspD 3574737..3577007 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  H5028_RS16895 (H5028_16880) - 3577049..3577885 (-) 837 WP_000870031.1 type II secretion system protein N -
  H5028_RS16900 (H5028_16885) gspN 3577885..3578628 (-) 744 WP_000730343.1 type II secretion system protein N -
  H5028_RS16905 (H5028_16890) hns 3578959..3579285 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  H5028_RS16910 (H5028_16895) - 3579480..3579920 (-) 441 WP_057078042.1 acyl-CoA thioesterase -
  H5028_RS16915 (H5028_16900) - 3579928..3581121 (-) 1194 WP_029424457.1 membrane protein -
  H5028_RS16920 (H5028_16905) - 3581131..3581970 (-) 840 WP_029424458.1 hypothetical protein -
  H5028_RS16925 (H5028_16910) - 3581979..3582746 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  H5028_RS16930 (H5028_16915) hemC 3582751..3583668 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=473378 H5028_RS16905 WP_000801427.1 3578959..3579285(-) (hns) [Acinetobacter baumannii strain TP3]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=473378 H5028_RS16905 WP_000801427.1 3578959..3579285(-) (hns) [Acinetobacter baumannii strain TP3]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1