Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   H5022_RS26375 Genome accession   NZ_CP060004
Coordinates   5613051..5613608 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WK172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5608051..5618608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5022_RS26355 (H5022_26215) pilR 5609327..5610664 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  H5022_RS26360 (H5022_26220) thiO 5610710..5611804 (-) 1095 WP_003123395.1 glycine oxidase ThiO -
  H5022_RS26365 (H5022_26225) - 5611939..5612448 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  H5022_RS26370 (H5022_26230) - 5612554..5613060 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  H5022_RS26375 (H5022_26235) pilV 5613051..5613608 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  H5022_RS26380 (H5022_26240) pilW 5613605..5614429 (+) 825 WP_003123396.1 type 4a pilus minor pilin PilW -
  H5022_RS26385 (H5022_26245) pilX 5614426..5615013 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  H5022_RS26390 (H5022_26250) pilY1 5615025..5618516 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=473205 H5022_RS26375 WP_003119423.1 5613051..5613608(+) (pilV) [Pseudomonas aeruginosa strain WK172]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=473205 H5022_RS26375 WP_003119423.1 5613051..5613608(+) (pilV) [Pseudomonas aeruginosa strain WK172]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995