Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6K15_RS07370 Genome accession   NZ_CP070152
Coordinates   1388939..1389676 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1285     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383939..1394676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K15_RS07355 (I6K15_07355) clpC 1384393..1386966 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I6K15_RS07360 (I6K15_07360) yfiH 1387096..1387827 (-) 732 WP_000040134.1 purine nucleoside phosphorylase YfiH -
  I6K15_RS07365 (I6K15_07365) rluD 1387824..1388804 (-) 981 WP_128278018.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6K15_RS07370 (I6K15_07370) comL 1388939..1389676 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6K15_RS07375 (I6K15_07375) - 1389780..1391126 (+) 1347 WP_169052421.1 IS4-like element IS4 family transposase -
  I6K15_RS07380 (I6K15_07380) raiA 1391387..1391728 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6K15_RS07385 (I6K15_07385) pheL 1391832..1391879 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6K15_RS07390 (I6K15_07390) pheA 1391978..1393138 (+) 1161 WP_204628413.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6K15_RS07395 (I6K15_07395) tyrA 1393181..1394302 (-) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=473205 I6K15_RS07370 WP_000197686.1 1388939..1389676(+) (comL) [Escherichia coli strain FDAARGOS_1285]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=473205 I6K15_RS07370 WP_000197686.1 1388939..1389676(+) (comL) [Escherichia coli strain FDAARGOS_1285]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376