Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K15_RS03995 Genome accession   NZ_CP070152
Coordinates   658881..660308 (+) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1285     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 653881..665308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K15_RS03955 (I6K15_03955) yeeW 654065..654259 (+) 195 WP_000988600.1 DUF5983 family protein -
  I6K15_RS03960 (I6K15_03960) - 654305..654385 (+) 81 Protein_657 hypothetical protein -
  I6K15_RS03965 (I6K15_03965) - 654674..654820 (-) 147 Protein_658 transposase domain-containing protein -
  I6K15_RS03970 (I6K15_03970) - 654874..655056 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  I6K15_RS03975 (I6K15_03975) tmaR 655157..655486 (-) 330 WP_000450409.1 DUF496 family protein -
  I6K15_RS03980 (I6K15_03980) yeeA 655658..656716 (-) 1059 WP_001200888.1 FUSC family protein -
  I6K15_RS03985 (I6K15_03985) sbmC 656914..657387 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6K15_RS03990 (I6K15_03990) dacD 657506..658672 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K15_RS03995 (I6K15_03995) sbcB 658881..660308 (+) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  I6K15_RS04000 (I6K15_04000) tsuB 660351..660578 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6K15_RS04005 (I6K15_04005) tsuA 660592..661650 (-) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  I6K15_RS04010 (I6K15_04010) plaP 661829..663187 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6K15_RS04015 (I6K15_04015) yoeI 663177..663239 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6K15_RS04020 (I6K15_04020) yeeY 663454..664383 (-) 930 WP_077737555.1 LysR substrate-binding domain-containing protein -
  I6K15_RS04025 (I6K15_04025) yeeZ 664429..665253 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=473196 I6K15_RS03995 WP_000980563.1 658881..660308(+) (sbcB) [Escherichia coli strain FDAARGOS_1285]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=473196 I6K15_RS03995 WP_000980563.1 658881..660308(+) (sbcB) [Escherichia coli strain FDAARGOS_1285]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581