Detailed information NTG0473149

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K27_RS17330
• Genome accession: NZ_CP070148
• Coordinates: 3587115..3588107 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1297
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3582115..3593107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K27_RS17310 (I6K27_17305)	ygbM	3582746..3583522 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
I6K27_RS17315 (I6K27_17310)	ygbN	3583611..3584975 (+)	1365	WP_000104443.1	GntP family transporter	-
I6K27_RS17320 (I6K27_17315)	-	3585118..3586161 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6K27_RS17325 (I6K27_17320)	-	3586386..3586937 (+)	552	WP_001179442.1	flavodoxin family protein	-
I6K27_RS17330 (I6K27_17325)	rpoS	3587115..3588107 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K27_RS17335 (I6K27_17330)	nlpD	3588170..3589264 (-)	1095	WP_306305124.1	murein hydrolase activator NlpD	-
I6K27_RS17340 (I6K27_17335)	pcm	3589449..3590075 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K27_RS17345 (I6K27_17340)	surE	3590069..3590830 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K27_RS17350 (I6K27_17345)	truD	3590811..3591860 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
I6K27_RS17355 (I6K27_17350)	ispF	3591857..3592336 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K27_RS17360 (I6K27_17355)	ispD	3592336..3593046 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=473149 I6K27_RS17330 WP_000081550.1 3587115..3588107(-) (rpoS) [Escherichia coli strain FDAARGOS_1297]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=473149 I6K27_RS17330 WP_000081550.1 3587115..3588107(-) (rpoS) [Escherichia coli strain FDAARGOS_1297]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715