Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K27_RS13410 Genome accession   NZ_CP070148
Coordinates   2778904..2780331 (+) Length   475 a.a.
NCBI ID   WP_000980617.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1297     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2773904..2785331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K27_RS13370 (I6K27_13365) yeeW 2774089..2774283 (+) 195 WP_000988601.1 DUF5983 family protein -
  I6K27_RS13375 (I6K27_13370) - 2774329..2774409 (+) 81 Protein_2660 hypothetical protein -
  I6K27_RS25540 (I6K27_13375) - 2774698..2774871 (-) 174 WP_032082634.1 transposase domain-containing protein -
  I6K27_RS25545 (I6K27_13380) - 2774898..2775080 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6K27_RS13390 (I6K27_13385) tmaR 2775181..2775510 (-) 330 WP_000450409.1 DUF496 family protein -
  I6K27_RS13395 (I6K27_13390) yeeA 2775682..2776740 (-) 1059 WP_001200890.1 FUSC family protein -
  I6K27_RS13400 (I6K27_13395) sbmC 2776938..2777411 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6K27_RS13405 (I6K27_13400) dacD 2777530..2778695 (-) 1166 Protein_2666 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K27_RS13410 (I6K27_13405) sbcB 2778904..2780331 (+) 1428 WP_000980617.1 exodeoxyribonuclease I Machinery gene
  I6K27_RS13415 (I6K27_13410) plaP 2780405..2781763 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  I6K27_RS13420 (I6K27_13415) yoeI 2781753..2781815 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6K27_RS13425 (I6K27_13420) yeeY 2782030..2782959 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  I6K27_RS13430 (I6K27_13425) yeeZ 2783005..2783829 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  I6K27_RS13435 (I6K27_13430) yoeB 2783912..2784166 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6K27_RS13440 (I6K27_13435) yefM 2784163..2784414 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6K27_RS13445 (I6K27_13440) hisL 2784697..2784747 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54541.87 Da        Isoelectric Point: 5.6114

>NTDB_id=473136 I6K27_RS13410 WP_000980617.1 2778904..2780331(+) (sbcB) [Escherichia coli strain FDAARGOS_1297]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=473136 I6K27_RS13410 WP_000980617.1 2778904..2780331(+) (sbcB) [Escherichia coli strain FDAARGOS_1297]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCAGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581