Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   H5J27_RS27610 Genome accession   NZ_CP059995
Coordinates   5803330..5803887 (+) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   A0A6A9K9C7
Organism   Pseudomonas aeruginosa strain NY3045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5798330..5808887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J27_RS27590 (H5J27_27590) pilR 5799606..5800943 (+) 1338 WP_042168494.1 two-component system response regulator PilR Regulator
  H5J27_RS27595 (H5J27_27595) thiO 5800989..5802083 (-) 1095 WP_033972971.1 glycine oxidase ThiO -
  H5J27_RS27600 (H5J27_27600) - 5802218..5802727 (+) 510 WP_039028119.1 Tfp pilus assembly protein FimT/FimU -
  H5J27_RS27605 (H5J27_27605) - 5802833..5803339 (+) 507 WP_003134935.1 Tfp pilus assembly protein FimT/FimU -
  H5J27_RS27610 (H5J27_27610) pilV 5803330..5803887 (+) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  H5J27_RS27615 (H5J27_27615) pilW 5803884..5804708 (+) 825 WP_042168489.1 type 4a pilus minor pilin PilW -
  H5J27_RS27620 (H5J27_27620) pilX 5804705..5805292 (+) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  H5J27_RS27625 (H5J27_27625) pilY1 5805304..5808789 (+) 3486 WP_033976379.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=473133 H5J27_RS27610 WP_003125211.1 5803330..5803887(+) (pilV) [Pseudomonas aeruginosa strain NY3045]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=473133 H5J27_RS27610 WP_003125211.1 5803330..5803887(+) (pilV) [Pseudomonas aeruginosa strain NY3045]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9K9C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989