Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H4O16_RS12930 Genome accession   NZ_CP059975
Coordinates   2451825..2452103 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain G03     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2446825..2457103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O16_RS12910 (H4O16_12770) - 2448500..2449309 (+) 810 WP_000678509.1 papain-like cysteine protease family protein -
  H4O16_RS12915 (H4O16_12775) - 2449335..2449937 (+) 603 WP_000517260.1 hypothetical protein -
  H4O16_RS12920 (H4O16_12780) - 2450177..2450429 (-) 253 Protein_2464 response regulator transcription factor -
  H4O16_RS12925 (H4O16_12785) - 2450806..2451684 (+) 879 WP_000393603.1 helix-turn-helix domain-containing protein -
  H4O16_RS12930 (H4O16_12790) abrB 2451825..2452103 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H4O16_RS12935 (H4O16_12795) - 2452623..2453873 (+) 1251 WP_001032363.1 hypothetical protein -
  H4O16_RS12940 (H4O16_12800) - 2453941..2454699 (+) 759 WP_000347987.1 TSUP family transporter -
  H4O16_RS12945 (H4O16_12805) - 2454953..2455612 (+) 660 WP_000682538.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=473030 H4O16_RS12930 WP_000842216.1 2451825..2452103(+) (abrB) [Bacillus thuringiensis strain G03]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=473030 H4O16_RS12930 WP_000842216.1 2451825..2452103(+) (abrB) [Bacillus thuringiensis strain G03]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489