Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H4O16_RS08790 Genome accession   NZ_CP059975
Coordinates   1638368..1638970 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus thuringiensis strain G03     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633368..1643970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O16_RS08770 (H4O16_08665) dnaD 1633707..1634414 (+) 708 WP_021728639.1 DNA replication protein DnaD -
  H4O16_RS08775 (H4O16_08670) nth 1634430..1635077 (+) 648 WP_000933034.1 endonuclease III -
  H4O16_RS08780 (H4O16_08675) - 1635081..1635599 (+) 519 WP_000442655.1 YpoC family protein -
  H4O16_RS08785 (H4O16_08680) - 1635626..1638301 (-) 2676 WP_021728640.1 PBP1A family penicillin-binding protein -
  H4O16_RS08790 (H4O16_08685) recU 1638368..1638970 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  H4O16_RS08795 (H4O16_08690) - 1639074..1640099 (+) 1026 WP_000495650.1 DUF2515 domain-containing protein -
  H4O16_RS08800 - 1640251..1640430 (-) 180 WP_001987054.1 hypothetical protein -
  H4O16_RS08805 (H4O16_08695) - 1640516..1640758 (+) 243 WP_001252036.1 hypothetical protein -
  H4O16_RS08810 (H4O16_08700) - 1640774..1641118 (+) 345 WP_000786940.1 YppE family protein -
  H4O16_RS08815 (H4O16_08705) - 1641145..1641336 (-) 192 WP_000242652.1 YppF family protein -
  H4O16_RS08820 (H4O16_08710) - 1641514..1642038 (+) 525 WP_021728641.1 YppG family protein -
  H4O16_RS08825 (H4O16_08715) - 1642194..1642622 (+) 429 WP_000546268.1 CotD family spore coat protein -
  H4O16_RS08830 (H4O16_08720) - 1642679..1643233 (+) 555 WP_000862915.1 DUF1273 domain-containing protein -
  H4O16_RS08835 (H4O16_08725) gpsB 1643331..1643666 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=473027 H4O16_RS08790 WP_000155598.1 1638368..1638970(-) (recU) [Bacillus thuringiensis strain G03]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=473027 H4O16_RS08790 WP_000155598.1 1638368..1638970(-) (recU) [Bacillus thuringiensis strain G03]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635