Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H4995_RS06880 Genome accession   NZ_CP059972
Coordinates   1313676..1313987 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C220     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308676..1318987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS06860 (H4995_06860) ctsE 1309545..1311104 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H4995_RS06865 (H4995_06865) ctsX 1311094..1311681 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4995_RS06870 (H4995_06870) ctsP 1311685..1312293 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4995_RS06875 (H4995_06875) ctsD 1312286..1313698 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4995_RS06880 (H4995_06880) ctsR 1313676..1313987 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4995_RS06885 (H4995_06885) nifJ 1314011..1317478 (-) 3468 Protein_1345 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H4995_RS06890 (H4995_06890) pseD 1317479..1318887 (-) 1409 Protein_1346 flagellin modification protein PseD -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=472983 H4995_RS06880 WP_002855438.1 1313676..1313987(-) (ctsR) [Campylobacter jejuni strain C220]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472983 H4995_RS06880 WP_002855438.1 1313676..1313987(-) (ctsR) [Campylobacter jejuni strain C220]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGGCATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1