Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   H4995_RS04940 Genome accession   NZ_CP059972
Coordinates   936009..936977 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter jejuni strain C220     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931009..941977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS04915 (H4995_04915) cdsA 931919..932644 (-) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  H4995_RS04920 (H4995_04920) - 932653..932991 (-) 339 WP_002852397.1 hypothetical protein -
  H4995_RS04925 (H4995_04925) - 932993..934300 (-) 1308 WP_002902413.1 NFACT family protein -
  H4995_RS04930 (H4995_04930) mobA 934362..934937 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  H4995_RS04935 (H4995_04935) pldA 934934..935923 (+) 990 WP_002902416.1 phospholipase A -
  H4995_RS04940 (H4995_04940) ceuB 936009..936977 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  H4995_RS04945 (H4995_04945) ceuC 936970..937908 (+) 939 WP_002859639.1 iron chelate uptake ABC transporter family permease subunit -
  H4995_RS04950 (H4995_04950) ceuD 937905..938660 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  H4995_RS04955 (H4995_04955) ceuB 938673..939665 (+) 993 WP_002859640.1 enterochelin ABC transporter substrate-binding protein CeuB -
  H4995_RS04965 (H4995_04965) - 939891..940445 (-) 555 WP_032581097.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=472974 H4995_RS04940 WP_002874446.1 936009..936977(+) (ceuB) [Campylobacter jejuni strain C220]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=472974 H4995_RS04940 WP_002874446.1 936009..936977(+) (ceuB) [Campylobacter jejuni strain C220]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCGCTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994