Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   H4995_RS04175 Genome accession   NZ_CP059972
Coordinates   787703..788662 (-) Length   319 a.a.
NCBI ID   WP_057044069.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C220     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 782703..793662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS04145 (H4995_04145) ccoS 783660..783866 (+) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  H4995_RS04150 (H4995_04150) - 783889..784191 (-) 303 WP_002852762.1 cytochrome c -
  H4995_RS04155 (H4995_04155) gmhB 784272..784833 (+) 562 Protein_819 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  H4995_RS04160 (H4995_04160) rfaD 784834..785787 (+) 954 WP_002859254.1 ADP-glyceromanno-heptose 6-epimerase -
  H4995_RS04165 (H4995_04165) rfaE1 785780..787165 (+) 1386 WP_002859253.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  H4995_RS04170 (H4995_04170) gmhA 787162..787722 (+) 561 WP_002859252.1 D-sedoheptulose 7-phosphate isomerase -
  H4995_RS04175 (H4995_04175) waaF 787703..788662 (-) 960 WP_057044069.1 glycosyltransferase family 9 protein Regulator
  H4995_RS04180 (H4995_04180) waaV 788721..789533 (+) 813 WP_002935342.1 glycosyltransferase family 2 protein -
  H4995_RS04190 (H4995_04190) - 790227..790637 (-) 411 WP_002783915.1 hypothetical protein -
  H4995_RS04195 (H4995_04195) ruvB 790728..791735 (+) 1008 WP_002859650.1 Holliday junction branch migration DNA helicase RuvB -
  H4995_RS04200 (H4995_04200) amaA 791739..792782 (+) 1044 WP_002859651.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36740.45 Da        Isoelectric Point: 10.3627

>NTDB_id=472970 H4995_RS04175 WP_057044069.1 787703..788662(-) (waaF) [Campylobacter jejuni strain C220]
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGINPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=472970 H4995_RS04175 WP_057044069.1 787703..788662(-) (waaF) [Campylobacter jejuni strain C220]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGAATCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.044

100

0.94