Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H4989_RS01570 Genome accession   NZ_CP059970
Coordinates   295226..295537 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C57     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 290226..300537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4989_RS01545 (H4989_01545) - 290307..290915 (-) 609 WP_002859215.1 uracil-DNA glycosylase family protein -
  H4989_RS01550 (H4989_01550) - 290912..291391 (-) 480 WP_002867426.1 GNAT family N-acetyltransferase -
  H4989_RS01555 (H4989_01555) rpmH 291522..291656 (+) 135 WP_002776864.1 50S ribosomal protein L34 -
  H4989_RS01560 (H4989_01560) - 291653..291790 (+) 138 Protein_308 ribonuclease P protein component -
  H4989_RS01565 (H4989_01565) nifJ 291783..295202 (+) 3420 Protein_309 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H4989_RS01570 (H4989_01570) ctsR 295226..295537 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4989_RS01575 (H4989_01575) ctsD 295515..296927 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4989_RS01580 (H4989_01580) ctsP 296920..297528 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4989_RS01585 (H4989_01585) ctsX 297532..298119 (+) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4989_RS01590 (H4989_01590) ctsE 298109..299668 (+) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=472909 H4989_RS01570 WP_002855438.1 295226..295537(+) (ctsR) [Campylobacter jejuni strain C57]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472909 H4989_RS01570 WP_002855438.1 295226..295537(+) (ctsR) [Campylobacter jejuni strain C57]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGGCATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1