Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H4990_RS05075 Genome accession   NZ_CP059969
Coordinates   967453..967890 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain C109     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 962453..972890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4990_RS05060 (H4990_05060) - 964569..964949 (+) 381 Protein_984 DUF262 domain-containing protein -
  H4990_RS05065 (H4990_05065) - 965010..965608 (+) 599 Protein_985 DUF2972 domain-containing protein -
  H4990_RS05070 (H4990_05070) priA 965618..967471 (-) 1854 WP_002859601.1 primosomal protein N' -
  H4990_RS05075 (H4990_05075) Cj0683 967453..967890 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4990_RS05080 (H4990_05080) - 967887..968129 (-) 243 WP_002854947.1 hypothetical protein -
  H4990_RS05085 (H4990_05085) - 968119..968349 (-) 231 WP_002852327.1 hypothetical protein -
  H4990_RS05090 (H4990_05090) uvrB 968503..970476 (+) 1974 WP_002859599.1 excinuclease ABC subunit UvrB -
  H4990_RS05095 (H4990_05095) kdpD 970578..972401 (-) 1824 WP_223210100.1 DUF4118 domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=472903 H4990_RS05075 WP_002852324.1 967453..967890(-) (Cj0683) [Campylobacter jejuni strain C109]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=472903 H4990_RS05075 WP_002852324.1 967453..967890(-) (Cj0683) [Campylobacter jejuni strain C109]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1