Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H4990_RS04380 Genome accession   NZ_CP059969
Coordinates   837746..838057 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C109     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832746..843057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4990_RS04360 (H4990_04360) ctsE 833615..835174 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H4990_RS04365 (H4990_04365) ctsX 835164..835751 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4990_RS04370 (H4990_04370) ctsP 835755..836363 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4990_RS04375 (H4990_04375) ctsD 836356..837768 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4990_RS04380 (H4990_04380) ctsR 837746..838057 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4990_RS04385 (H4990_04385) nifJ 838081..841500 (-) 3420 Protein_853 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H4990_RS08930 - 841536..841664 (-) 129 WP_285949729.1 hypothetical protein -
  H4990_RS04390 (H4990_04390) - 841661..841771 (-) 111 WP_002860186.1 hypothetical protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=472898 H4990_RS04380 WP_002855438.1 837746..838057(-) (ctsR) [Campylobacter jejuni strain C109]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472898 H4990_RS04380 WP_002855438.1 837746..838057(-) (ctsR) [Campylobacter jejuni strain C109]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGGCATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1