Detailed information NTG0472898

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K28_RS13425
• Genome accession: NZ_CP070115
• Coordinates: 2804361..2805353 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1298
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2799361..2810353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K28_RS13395 (I6K28_13370)	ispD	2799422..2800132 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K28_RS13400 (I6K28_13375)	ispF	2800132..2800611 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K28_RS13405 (I6K28_13380)	truD	2800608..2801657 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
I6K28_RS13410 (I6K28_13385)	surE	2801638..2802399 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K28_RS13415 (I6K28_13390)	pcm	2802393..2803019 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K28_RS13420 (I6K28_13395)	nlpD	2803204..2804298 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6K28_RS13425 (I6K28_13400)	rpoS	2804361..2805353 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K28_RS13430 (I6K28_13405)	-	2805531..2806082 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6K28_RS13435 (I6K28_13410)	-	2806307..2807350 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6K28_RS13440 (I6K28_13415)	ygbN	2807493..2808857 (-)	1365	WP_000104443.1	GntP family transporter	-
I6K28_RS13445 (I6K28_13420)	ygbM	2808946..2809722 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=472898 I6K28_RS13425 WP_000081550.1 2804361..2805353(+) (rpoS) [Escherichia coli strain FDAARGOS_1298]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=472898 I6K28_RS13425 WP_000081550.1 2804361..2805353(+) (rpoS) [Escherichia coli strain FDAARGOS_1298]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715