Detailed information NTG0472888

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: H4990_RS02615
• Genome accession: NZ_CP059969
• Coordinates: 499785..500744 (-)
• Length: 319 a.a.
• NCBI ID: WP_002935343.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain C109
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 494785..505744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4990_RS02585 (H4990_02585)	ccoS	495742..495948 (+)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-
H4990_RS02590 (H4990_02590)	-	495971..496273 (-)	303	WP_002852762.1	cytochrome c	-
H4990_RS02595 (H4990_02595)	gmhB	496354..496915 (+)	562	Protein_505	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
H4990_RS02600 (H4990_02600)	rfaD	496916..497869 (+)	954	WP_002859254.1	ADP-glyceromanno-heptose 6-epimerase	-
H4990_RS02605 (H4990_02605)	rfaE1	497862..499247 (+)	1386	WP_002859253.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
H4990_RS02610 (H4990_02610)	gmhA	499244..499804 (+)	561	WP_002859252.1	D-sedoheptulose 7-phosphate isomerase	-
H4990_RS02615 (H4990_02615)	waaF	499785..500744 (-)	960	WP_002935343.1	lipopolysaccharide heptosyltransferase II	Regulator
H4990_RS02620 (H4990_02620)	waaV	500803..501615 (+)	813	WP_002935342.1	glycosyltransferase family 2 protein	-
H4990_RS02625 (H4990_02625)	-	501674..502306 (-)	633	WP_032580870.1	CatB-related O-acetyltransferase	-
H4990_RS02630 (H4990_02630)	-	502430..503095 (-)	666	WP_032580869.1	acylneuraminate cytidylyltransferase family protein	-
H4990_RS02635 (H4990_02635)	-	503092..503424 (-)	333	WP_019260376.1	hypothetical protein	-
H4990_RS02640 (H4990_02640)	-	503545..504201 (-)	657	WP_002857772.1	lactate utilization protein C	-
H4990_RS02645 (H4990_02645)	-	504194..505633 (-)	1440	WP_002860571.1	LutB/LldF family L-lactate oxidation iron-sulfur protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36740.45 Da
• Isoelectric Point: 10.3627

>NTDB_id=472888 H4990_RS02615 WP_002935343.1 499785..500744(-) (waaF) [Campylobacter jejuni strain C109]
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=472888 H4990_RS02615 WP_002935343.1 499785..500744(-) (waaF) [Campylobacter jejuni strain C109]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.357	100	0.944