Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   H4990_RS00305 Genome accession   NZ_CP059969
Coordinates   59948..60916 (-) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter jejuni strain C109     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 54948..65916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4990_RS00280 (H4990_00280) - 56480..57034 (+) 555 WP_032581097.1 membrane protein -
  H4990_RS00290 (H4990_00290) ceuB 57260..58252 (-) 993 WP_002859640.1 enterochelin ABC transporter substrate-binding protein CeuB -
  H4990_RS00295 (H4990_00295) ceuD 58265..59020 (-) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  H4990_RS00300 (H4990_00300) ceuC 59017..59955 (-) 939 WP_002859639.1 iron chelate uptake ABC transporter family permease subunit -
  H4990_RS00305 (H4990_00305) ceuB 59948..60916 (-) 969 WP_002874446.1 ABC transporter permease Machinery gene
  H4990_RS00310 (H4990_00310) pldA 61002..61991 (-) 990 WP_002902416.1 phospholipase A -
  H4990_RS00315 (H4990_00315) mobA 61988..62563 (-) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  H4990_RS00320 (H4990_00320) - 62625..63932 (+) 1308 WP_002902413.1 NFACT family protein -
  H4990_RS00325 (H4990_00325) - 63934..64272 (+) 339 WP_002852397.1 hypothetical protein -
  H4990_RS00330 (H4990_00330) cdsA 64281..65006 (+) 726 WP_182579326.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=472882 H4990_RS00305 WP_002874446.1 59948..60916(-) (ceuB) [Campylobacter jejuni strain C109]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=472882 H4990_RS00305 WP_002874446.1 59948..60916(-) (ceuB) [Campylobacter jejuni strain C109]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCGCTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994