Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   I6K28_RS01025 Genome accession   NZ_CP070115
Coordinates   197555..198160 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain FDAARGOS_1298     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 192555..203160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K28_RS01005 (I6K28_00995) aes 192696..193655 (+) 960 WP_000801795.1 acetyl esterase -
  I6K28_RS01010 (I6K28_01000) hemH 193652..194614 (-) 963 WP_001250129.1 ferrochelatase -
  I6K28_RS01015 (I6K28_01005) adk 194746..195390 (-) 645 WP_001331495.1 adenylate kinase -
  I6K28_RS01020 (I6K28_01010) htpG 195571..197445 (-) 1875 WP_000678211.1 molecular chaperone HtpG -
  I6K28_RS01025 (I6K28_01015) recR 197555..198160 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  I6K28_RS01030 (I6K28_01020) ybaB 198160..198489 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  I6K28_RS01035 (I6K28_01025) dnaX 198542..200473 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  I6K28_RS01040 (I6K28_01030) apt 200602..201153 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  I6K28_RS01045 (I6K28_01035) ybaN 201306..201683 (-) 378 WP_001188900.1 DUF454 family protein -
  I6K28_RS01050 (I6K28_01040) priC 201753..202280 (+) 528 WP_000844868.1 primosomal replication protein N'' -
  I6K28_RS01055 (I6K28_01045) rsmS 202294..202455 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  I6K28_RS26645 - 202508..202606 (-) 99 Protein_213 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=472842 I6K28_RS01025 WP_001195025.1 197555..198160(-) (recR) [Escherichia coli strain FDAARGOS_1298]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=472842 I6K28_RS01025 WP_001195025.1 197555..198160(-) (recR) [Escherichia coli strain FDAARGOS_1298]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443