Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H4992_RS04590 Genome accession   NZ_CP059967
Coordinates   853177..853614 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain C201     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 848177..858614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4992_RS09070 - 848671..849822 (+) 1152 WP_237928839.1 sensor histidine kinase KdpD -
  H4992_RS09075 - 849846..850478 (+) 633 WP_237928838.1 DUF4118 domain-containing protein -
  H4992_RS09205 - 850465..850596 (+) 132 WP_256379349.1 hypothetical protein -
  H4992_RS04575 (H4992_04575) uvrB 850591..852564 (-) 1974 WP_182577174.1 excinuclease ABC subunit UvrB -
  H4992_RS04580 (H4992_04580) - 852718..852948 (+) 231 WP_002852327.1 hypothetical protein -
  H4992_RS04585 (H4992_04585) - 852938..853180 (+) 243 WP_002854947.1 hypothetical protein -
  H4992_RS04590 (H4992_04590) Cj0683 853177..853614 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4992_RS04595 (H4992_04595) priA 853596..855449 (+) 1854 WP_002860009.1 primosomal protein N' -
  H4992_RS04600 (H4992_04600) - 855459..856016 (-) 558 Protein_905 DUF2972 domain-containing protein -
  H4992_RS04605 (H4992_04605) - 856135..856895 (-) 761 Protein_906 amino acid ABC transporter ATP-binding protein -
  H4992_RS04610 (H4992_04610) - 856897..857553 (-) 657 WP_002864176.1 amino acid ABC transporter permease -
  H4992_RS04615 (H4992_04615) - 857546..858247 (-) 702 WP_002858512.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=472841 H4992_RS04590 WP_002852324.1 853177..853614(+) (Cj0683) [Campylobacter jejuni strain C201]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=472841 H4992_RS04590 WP_002852324.1 853177..853614(+) (Cj0683) [Campylobacter jejuni strain C201]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1