Detailed information NTG0472832

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K31_RS22030
• Genome accession: NZ_CP070111
• Coordinates: 4607219..4608211 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1301
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4602219..4613211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K31_RS22000 (I6K31_22000)	ispD	4602280..4602990 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K31_RS22005 (I6K31_22005)	ispF	4602990..4603469 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K31_RS22010 (I6K31_22010)	truD	4603466..4604515 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
I6K31_RS22015 (I6K31_22015)	surE	4604496..4605257 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K31_RS22020 (I6K31_22020)	pcm	4605251..4605877 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K31_RS22025 (I6K31_22025)	nlpD	4606062..4607156 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6K31_RS22030 (I6K31_22030)	rpoS	4607219..4608211 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K31_RS22035 (I6K31_22035)	-	4608389..4608940 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6K31_RS22040 (I6K31_22040)	-	4609165..4610208 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6K31_RS22045 (I6K31_22045)	ygbN	4610351..4611715 (-)	1365	WP_016239308.1	GntP family transporter	-
I6K31_RS22050 (I6K31_22050)	ygbM	4611804..4612580 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=472832 I6K31_RS22030 WP_000081550.1 4607219..4608211(+) (rpoS) [Escherichia coli strain FDAARGOS_1301]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=472832 I6K31_RS22030 WP_000081550.1 4607219..4608211(+) (rpoS) [Escherichia coli strain FDAARGOS_1301]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715