Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   H4993_RS06040 Genome accession   NZ_CP059966
Coordinates   1155290..1155898 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain C203     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150290..1160898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS06030 (H4993_06030) ctsR 1153596..1153907 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4993_RS06035 (H4993_06035) ctsD 1153885..1155297 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4993_RS06040 (H4993_06040) ctsP 1155290..1155898 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4993_RS06045 (H4993_06045) ctsX 1155902..1156489 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H4993_RS06050 (H4993_06050) ctsE 1156479..1158038 (+) 1560 WP_002868228.1 GspE/PulE family protein Machinery gene
  H4993_RS06055 (H4993_06055) ctsF 1158035..1159216 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H4993_RS06060 (H4993_06060) - 1159209..1159973 (-) 765 WP_002855821.1 TSUP family transporter -
  H4993_RS06065 (H4993_06065) - 1159977..1160741 (-) 765 WP_002868230.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=472822 H4993_RS06040 WP_002851464.1 1155290..1155898(+) (ctsP) [Campylobacter jejuni strain C203]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=472822 H4993_RS06040 WP_002851464.1 1155290..1155898(+) (ctsP) [Campylobacter jejuni strain C203]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTACGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995