Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   H4993_RS05790 Genome accession   NZ_CP059966
Coordinates   1103203..1104162 (-) Length   319 a.a.
NCBI ID   WP_002868600.1    Uniprot ID   A0A5T0IKQ4
Organism   Campylobacter jejuni strain C203     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1098203..1109162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS05760 (H4993_05760) ccoS 1099160..1099366 (+) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  H4993_RS05765 (H4993_05765) - 1099389..1099691 (-) 303 WP_002852762.1 cytochrome c -
  H4993_RS05770 (H4993_05770) gmhB 1099772..1100333 (+) 562 Protein_1132 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  H4993_RS05775 (H4993_05775) rfaD 1100334..1101287 (+) 954 WP_002868597.1 ADP-glyceromanno-heptose 6-epimerase -
  H4993_RS05780 (H4993_05780) rfaE1 1101280..1102665 (+) 1386 WP_002868598.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  H4993_RS05785 (H4993_05785) gmhA 1102662..1103222 (+) 561 WP_002868599.1 D-sedoheptulose 7-phosphate isomerase -
  H4993_RS05790 (H4993_05790) waaF 1103203..1104162 (-) 960 WP_002868600.1 lipopolysaccharide heptosyltransferase II Regulator
  H4993_RS05795 (H4993_05795) waaV 1104221..1105033 (+) 813 WP_002868601.1 glycosyltransferase family 2 protein -
  H4993_RS05800 (H4993_05800) - 1105092..1105724 (-) 633 WP_002868602.1 CatB-related O-acetyltransferase -
  H4993_RS05805 (H4993_05805) - 1105847..1106512 (-) 666 WP_002868603.1 acylneuraminate cytidylyltransferase family protein -
  H4993_RS05810 (H4993_05810) - 1106509..1106883 (-) 375 WP_353477364.1 hypothetical protein -
  H4993_RS05815 (H4993_05815) hsrA 1106945..1107616 (+) 672 WP_002854696.1 homeostatic response regulator transcription factor HsrA -
  H4993_RS05820 (H4993_05820) fdxB 1107729..1107974 (+) 246 WP_002854647.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36754.48 Da        Isoelectric Point: 10.3627

>NTDB_id=472819 H4993_RS05790 WP_002868600.1 1103203..1104162(-) (waaF) [Campylobacter jejuni strain C203]
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAIYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=472819 H4993_RS05790 WP_002868600.1 1103203..1104162(-) (waaF) [Campylobacter jejuni strain C203]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGATTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0IKQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.044

100

0.94