Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   H4993_RS03710 Genome accession   NZ_CP059966
Coordinates   707477..708208 (+) Length   243 a.a.
NCBI ID   WP_002868635.1    Uniprot ID   A0AAX0HSC9
Organism   Campylobacter jejuni strain C203     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 702477..713208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS03680 (H4993_03680) rpsF 702619..702996 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  H4993_RS03685 (H4993_03685) ssb 703005..703556 (+) 552 WP_002865738.1 single-stranded DNA-binding protein -
  H4993_RS03690 (H4993_03690) rpsR 703567..703827 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  H4993_RS03695 (H4993_03695) lon 703888..706263 (-) 2376 WP_002868636.1 endopeptidase La -
  H4993_RS03700 (H4993_03700) - 706280..706927 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  H4993_RS03705 (H4993_03705) fliW 707088..707477 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  H4993_RS03710 (H4993_03710) proC 707477..708208 (+) 732 WP_002868635.1 pyrroline-5-carboxylate reductase Machinery gene
  H4993_RS03715 (H4993_03715) ctsT 708205..708507 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  H4993_RS03720 (H4993_03720) - 708504..709166 (+) 663 WP_002858296.1 hypothetical protein -
  H4993_RS03725 (H4993_03725) - 709163..709615 (+) 453 WP_002859148.1 hypothetical protein -
  H4993_RS03730 (H4993_03730) hemD 709612..710241 (-) 630 WP_002868634.1 uroporphyrinogen-III synthase -
  H4993_RS03735 (H4993_03735) thiE 710219..710851 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  H4993_RS03740 (H4993_03740) thiD 710841..711653 (-) 813 WP_002868633.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H4993_RS03745 (H4993_03745) - 711650..712336 (-) 687 WP_002868632.1 endonuclease III domain-containing protein -
  H4993_RS03750 (H4993_03750) - 712333..713094 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26545.93 Da        Isoelectric Point: 8.5934

>NTDB_id=472809 H4993_RS03710 WP_002868635.1 707477..708208(+) (proC) [Campylobacter jejuni strain C203]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTVKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=472809 H4993_RS03710 WP_002868635.1 707477..708208(+) (proC) [Campylobacter jejuni strain C203]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATATAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTCGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAGTAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.177

100

0.992