Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   H4994_RS07675 Genome accession   NZ_CP059965
Coordinates   1452941..1453672 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain C219     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1447941..1458672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4994_RS07645 (H4994_07645) rpsF 1448087..1448464 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  H4994_RS07650 (H4994_07650) ssb 1448473..1449021 (+) 549 WP_002860190.1 single-stranded DNA-binding protein -
  H4994_RS07655 (H4994_07655) rpsR 1449032..1449292 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  H4994_RS07660 (H4994_07660) lon 1449352..1451727 (-) 2376 WP_002853487.1 endopeptidase La -
  H4994_RS07665 (H4994_07665) - 1451744..1452391 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  H4994_RS07670 (H4994_07670) fliW 1452552..1452941 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  H4994_RS07675 (H4994_07675) proC 1452941..1453672 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  H4994_RS07680 (H4994_07680) ctsT 1453669..1453971 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  H4994_RS07685 (H4994_07685) - 1453968..1454630 (+) 663 WP_146314457.1 hypothetical protein -
  H4994_RS07690 (H4994_07690) - 1454627..1455079 (+) 453 WP_002859148.1 hypothetical protein -
  H4994_RS07695 (H4994_07695) hemD 1455076..1455705 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  H4994_RS07700 (H4994_07700) thiE 1455683..1456315 (-) 633 WP_060809525.1 thiamine phosphate synthase -
  H4994_RS07705 (H4994_07705) thiD 1456305..1457117 (-) 813 WP_002852691.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H4994_RS07710 (H4994_07710) - 1457114..1457800 (-) 687 WP_060809526.1 endonuclease III domain-containing protein -
  H4994_RS07715 (H4994_07715) - 1457797..1458558 (-) 762 WP_002872533.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=472800 H4994_RS07675 WP_002859150.1 1452941..1453672(+) (proC) [Campylobacter jejuni strain C219]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=472800 H4994_RS07675 WP_002859150.1 1452941..1453672(+) (proC) [Campylobacter jejuni strain C219]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996