Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H4994_RS04485 Genome accession   NZ_CP059965
Coordinates   846377..846814 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain C219     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 841377..851814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4994_RS04470 (H4994_04470) ispG 841919..842992 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  H4994_RS04475 (H4994_04475) cipA 843138..844532 (+) 1395 Protein_872 DUF2972 domain-containing protein -
  H4994_RS04480 (H4994_04480) priA 844542..846395 (-) 1854 WP_146314501.1 primosomal protein N' -
  H4994_RS04485 (H4994_04485) Cj0683 846377..846814 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4994_RS04490 (H4994_04490) - 846811..847053 (-) 243 WP_002854947.1 hypothetical protein -
  H4994_RS04495 (H4994_04495) - 847043..847273 (-) 231 WP_002852327.1 hypothetical protein -
  H4994_RS04500 (H4994_04500) uvrB 847427..849400 (+) 1974 WP_146314502.1 excinuclease ABC subunit UvrB -
  H4994_RS09265 - 849395..849526 (-) 132 WP_256379349.1 hypothetical protein -
  H4994_RS09105 - 849513..850145 (-) 633 WP_251825036.1 DUF4118 domain-containing protein -
  H4994_RS09110 - 850169..851191 (-) 1023 WP_240373841.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=472794 H4994_RS04485 WP_002852324.1 846377..846814(-) (Cj0683) [Campylobacter jejuni strain C219]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=472794 H4994_RS04485 WP_002852324.1 846377..846814(-) (Cj0683) [Campylobacter jejuni strain C219]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCCCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1