Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R2866_RS09405 Genome accession   NC_017451
Coordinates   1906484..1907137 (-) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae R2866     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901484..1912137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2866_RS09405 (R2866_1872) sxy/tfoX 1906484..1907137 (-) 654 WP_005692773.1 DNA transformation protein TfoX Regulator
  R2866_RS09410 (R2866_1873) recA 1907511..1908575 (+) 1065 WP_005651076.1 recombinase RecA Machinery gene
  R2866_RS09415 (R2866_1874) recX 1908654..1909112 (+) 459 WP_005651075.1 recombination regulator RecX -
  R2866_RS09420 (R2866_1875) crcB 1909109..1909495 (-) 387 WP_005651074.1 fluoride efflux transporter CrcB -
  R2866_RS09425 (R2866_1876) - 1909495..1910313 (-) 819 WP_005651073.1 Cof-type HAD-IIB family hydrolase -
  R2866_RS09430 (R2866_1877) - 1910716..1911720 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -
  R2866_RS10090 speFL 1911926..1912120 (+) 195 WP_100059562.1 leader peptide SpeFL -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=47279 R2866_RS09405 WP_005692773.1 1906484..1907137(-) (sxy/tfoX) [Haemophilus influenzae R2866]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=47279 R2866_RS09405 WP_005692773.1 1906484..1907137(-) (sxy/tfoX) [Haemophilus influenzae R2866]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment