Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R2866_RS09115 Genome accession   NC_017451
Coordinates   1856157..1856453 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae R2866     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1851157..1861453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2866_RS09105 (R2866_1813) - 1852671..1855712 (+) 3042 WP_020910211.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  R2866_RS09110 (R2866_1814) - 1855982..1856164 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  R2866_RS09115 (R2866_1815) HI0659 1856157..1856453 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  R2866_RS09120 (R2866_1816) - 1856637..1858553 (+) 1917 WP_020910212.1 ABC transporter ATP-binding protein -
  R2866_RS09125 (R2866_1817) - 1858563..1859099 (+) 537 WP_020910213.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  R2866_RS09130 (R2866_1818) - 1859115..1859666 (+) 552 WP_020910214.1 Sua5/YciO/YrdC/YwlC family protein -
  R2866_RS09135 (R2866_1819) aroE 1859670..1860476 (+) 807 WP_020910215.1 shikimate dehydrogenase -
  R2866_RS09140 (R2866_1820) - 1860488..1861240 (+) 753 WP_020910216.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=47278 R2866_RS09115 WP_005650837.1 1856157..1856453(+) (HI0659) [Haemophilus influenzae R2866]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=47278 R2866_RS09115 WP_005650837.1 1856157..1856453(+) (HI0659) [Haemophilus influenzae R2866]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGAAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment