Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   I6K31_RS09965 Genome accession   NZ_CP070111
Coordinates   2060465..2061070 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain FDAARGOS_1301     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2055465..2066070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K31_RS09945 (I6K31_09945) aes 2055606..2056565 (+) 960 WP_000801795.1 acetyl esterase -
  I6K31_RS09950 (I6K31_09950) hemH 2056562..2057524 (-) 963 WP_001250114.1 ferrochelatase -
  I6K31_RS09955 (I6K31_09955) adk 2057656..2058300 (-) 645 WP_001331495.1 adenylate kinase -
  I6K31_RS09960 (I6K31_09960) htpG 2058481..2060355 (-) 1875 WP_000678211.1 molecular chaperone HtpG -
  I6K31_RS09965 (I6K31_09965) recR 2060465..2061070 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  I6K31_RS09970 (I6K31_09970) ybaB 2061070..2061399 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  I6K31_RS09975 (I6K31_09975) dnaX 2061452..2063383 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  I6K31_RS09980 (I6K31_09980) apt 2063512..2064063 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  I6K31_RS09985 (I6K31_09985) ybaN 2064216..2064593 (-) 378 WP_001188900.1 DUF454 family protein -
  I6K31_RS09990 (I6K31_09990) priC 2064663..2065190 (+) 528 WP_000844868.1 primosomal replication protein N'' -
  I6K31_RS09995 (I6K31_09995) rsmS 2065204..2065365 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  I6K31_RS25585 - 2065418..2065516 (-) 99 Protein_1983 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=472775 I6K31_RS09965 WP_001195025.1 2060465..2061070(-) (recR) [Escherichia coli strain FDAARGOS_1301]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=472775 I6K31_RS09965 WP_001195025.1 2060465..2061070(-) (recR) [Escherichia coli strain FDAARGOS_1301]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443