Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H5A01_RS08110 Genome accession   NZ_CP059964
Coordinates   1500898..1501335 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain C1922C72     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1495898..1506335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS08930 - 1496385..1496978 (+) 594 WP_251823406.1 hypothetical protein -
  H5A01_RS08090 (H5A01_08090) - 1496965..1498317 (+) 1353 WP_251823407.1 DUF4118 domain-containing protein -
  H5A01_RS08095 (H5A01_08095) uvrB 1498312..1500285 (-) 1974 WP_167843434.1 excinuclease ABC subunit UvrB -
  H5A01_RS08100 (H5A01_08100) - 1500439..1500669 (+) 231 WP_002852327.1 hypothetical protein -
  H5A01_RS08105 (H5A01_08105) - 1500659..1500901 (+) 243 WP_002854947.1 hypothetical protein -
  H5A01_RS08110 (H5A01_08110) Cj0683 1500898..1501335 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H5A01_RS08115 (H5A01_08115) priA 1501317..1503170 (+) 1854 WP_002888182.1 primosomal protein N' -
  H5A01_RS08120 (H5A01_08120) - 1503180..1503821 (-) 642 Protein_1592 DUF2972 domain-containing protein -
  H5A01_RS08125 (H5A01_08125) - 1503820..1505757 (-) 1938 Protein_1593 methyl-accepting chemotaxis protein -
  H5A01_RS08130 (H5A01_08130) rnpA 1505879..1506069 (-) 191 Protein_1594 ribonuclease P protein component -
  H5A01_RS08135 (H5A01_08135) rpmH 1506066..1506200 (-) 135 WP_002776864.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=472774 H5A01_RS08110 WP_002852324.1 1500898..1501335(+) (Cj0683) [Campylobacter jejuni strain C1922C72]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=472774 H5A01_RS08110 WP_002852324.1 1500898..1501335(+) (Cj0683) [Campylobacter jejuni strain C1922C72]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1