Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   H5A01_RS00975 Genome accession   NZ_CP059964
Coordinates   197561..198529 (-) Length   322 a.a.
NCBI ID   WP_057096248.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C1922C72     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 192561..203529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS00950 (H5A01_00950) - 194093..194647 (+) 555 WP_052794237.1 hypothetical protein -
  H5A01_RS00960 (H5A01_00960) ceuB 194873..195865 (-) 993 WP_053869878.1 enterochelin ABC transporter substrate-binding protein CeuB -
  H5A01_RS00965 (H5A01_00965) ceuD 195878..196633 (-) 756 WP_002871403.1 ABC transporter ATP-binding protein -
  H5A01_RS00970 (H5A01_00970) ceuC 196630..197568 (-) 939 WP_057096249.1 iron chelate uptake ABC transporter family permease subunit -
  H5A01_RS00975 (H5A01_00975) ceuB 197561..198529 (-) 969 WP_057096248.1 ABC transporter permease Machinery gene
  H5A01_RS00980 (H5A01_00980) pldA 198615..199604 (-) 990 WP_167843212.1 phospholipase A -
  H5A01_RS00985 (H5A01_00985) mobA 199601..200176 (-) 576 WP_002858185.1 molybdenum cofactor guanylyltransferase -
  H5A01_RS00990 (H5A01_00990) - 200238..201545 (+) 1308 WP_182263835.1 NFACT family protein -
  H5A01_RS00995 (H5A01_00995) - 201547..201885 (+) 339 WP_136696331.1 hypothetical protein -
  H5A01_RS01000 (H5A01_01000) cdsA 201894..202619 (+) 726 WP_002867314.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35453.40 Da        Isoelectric Point: 9.6678

>NTDB_id=472756 H5A01_RS00975 WP_057096248.1 197561..198529(-) (ceuB) [Campylobacter jejuni strain C1922C72]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=472756 H5A01_RS00975 WP_057096248.1 197561..198529(-) (ceuB) [Campylobacter jejuni strain C1922C72]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTTTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGACTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTCATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTATTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991