Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | H5A01_RS00345 | Genome accession | NZ_CP059964 |
| Coordinates | 63863..64807 (-) | Length | 314 a.a. |
| NCBI ID | WP_002844797.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain C1922C72 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 53750..100519 | 63863..64807 | within | 0 |
Gene organization within MGE regions
Location: 53750..100519
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5A01_RS00295 (H5A01_00295) | dnaX | 53750..55279 (-) | 1530 | WP_002866174.1 | DNA polymerase III subunit gamma/tau | - |
| H5A01_RS00300 (H5A01_00300) | rho | 55283..56581 (-) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| H5A01_RS00305 (H5A01_00305) | - | 56690..59047 (+) | 2358 | WP_167843158.1 | heavy metal translocating P-type ATPase | - |
| H5A01_RS00310 (H5A01_00310) | ccoS | 59044..59250 (+) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| H5A01_RS00315 (H5A01_00315) | - | 59273..59575 (-) | 303 | WP_182263759.1 | cytochrome c | - |
| H5A01_RS00320 (H5A01_00320) | gmhB | 59657..60217 (+) | 561 | WP_182263760.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| H5A01_RS00325 (H5A01_00325) | rfaD | 60218..61171 (+) | 954 | WP_052806073.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| H5A01_RS00330 (H5A01_00330) | rfaE1 | 61164..62549 (+) | 1386 | WP_182263761.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| H5A01_RS00335 (H5A01_00335) | gmhA | 62546..63106 (+) | 561 | WP_182263762.1 | D-sedoheptulose 7-phosphate isomerase | - |
| H5A01_RS00340 (H5A01_00340) | - | 63106..63870 (+) | 765 | WP_052777778.1 | glycosyltransferase family 25 protein | - |
| H5A01_RS00345 (H5A01_00345) | waaF | 63863..64807 (-) | 945 | WP_002844797.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| H5A01_RS00350 (H5A01_00350) | - | 64867..65688 (+) | 822 | WP_182263763.1 | glycosyltransferase family 2 protein | - |
| H5A01_RS00355 (H5A01_00355) | - | 65731..67098 (+) | 1368 | WP_182263764.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| H5A01_RS00360 (H5A01_00360) | gmd | 67099..68238 (+) | 1140 | WP_002844800.1 | GDP-mannose 4,6-dehydratase | - |
| H5A01_RS00365 (H5A01_00365) | - | 68231..69169 (+) | 939 | WP_002844801.1 | NAD-dependent epimerase/dehydratase family protein | - |
| H5A01_RS00370 (H5A01_00370) | - | 69162..70331 (+) | 1170 | WP_182263765.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| H5A01_RS00375 (H5A01_00375) | - | 70709..71728 (+) | 1020 | WP_002844805.1 | glycosyltransferase family 10 | - |
| H5A01_RS00380 (H5A01_00380) | - | 71742..72713 (+) | 972 | WP_002844807.1 | alpha-1,2-fucosyltransferase | - |
| H5A01_RS00385 (H5A01_00385) | rfbF | 72710..73525 (+) | 816 | WP_002844809.1 | glucose-1-phosphate cytidylyltransferase | - |
| H5A01_RS00390 (H5A01_00390) | rfbG | 73529..74602 (+) | 1074 | WP_002844810.1 | CDP-glucose 4,6-dehydratase | - |
| H5A01_RS00395 (H5A01_00395) | - | 74619..76376 (+) | 1758 | WP_002844812.1 | thiamine pyrophosphate-binding protein | - |
| H5A01_RS00400 (H5A01_00400) | - | 76380..77297 (+) | 918 | WP_002844814.1 | NAD-dependent epimerase/dehydratase family protein | - |
| H5A01_RS00405 (H5A01_00405) | rfbH | 77300..78622 (+) | 1323 | WP_002844816.1 | lipopolysaccharide biosynthesis protein RfbH | - |
| H5A01_RS00410 (H5A01_00410) | - | 78638..79711 (+) | 1074 | WP_002844818.1 | glycosyltransferase family A protein | - |
| H5A01_RS00415 (H5A01_00415) | - | 79759..80970 (+) | 1212 | WP_002844820.1 | glycosyltransferase family 8 protein | - |
| H5A01_RS00420 (H5A01_00420) | - | 80957..82009 (-) | 1053 | WP_182263766.1 | glycosyltransferase family 4 protein | - |
| H5A01_RS00425 (H5A01_00425) | - | 82006..83559 (-) | 1554 | WP_139849858.1 | glycosyltransferase | - |
| H5A01_RS00430 (H5A01_00430) | htrB | 83556..84443 (-) | 888 | WP_167843148.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| H5A01_RS00435 (H5A01_00435) | waaC | 84433..85461 (-) | 1029 | WP_182263767.1 | lipopolysaccharide heptosyltransferase I | - |
| H5A01_RS00440 (H5A01_00440) | - | 85527..86321 (+) | 795 | WP_038402139.1 | 3'-5' exonuclease | - |
| H5A01_RS00445 (H5A01_00445) | galE | 86380..87366 (+) | 987 | WP_002874249.1 | UDP-glucose 4-epimerase GalE | - |
| H5A01_RS00450 (H5A01_00450) | pglK | 87360..89054 (+) | 1695 | WP_057032712.1 | ABC-type lipopolysaccharide transporter PglK | - |
| H5A01_RS00455 (H5A01_00455) | pglH | 89051..90130 (+) | 1080 | WP_002860219.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| H5A01_RS00460 (H5A01_00460) | pglI | 90123..91052 (+) | 930 | WP_115794544.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| H5A01_RS00465 (H5A01_00465) | pglJ | 91040..92137 (+) | 1098 | WP_167843145.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| H5A01_RS00470 (H5A01_00470) | pglB | 92141..94282 (+) | 2142 | WP_167843144.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| H5A01_RS00475 (H5A01_00475) | pglA | 94292..95422 (+) | 1131 | WP_167842837.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| H5A01_RS00480 (H5A01_00480) | pglC | 95415..96017 (+) | 603 | WP_002861839.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| H5A01_RS00485 (H5A01_00485) | pglD | 96004..96594 (+) | 591 | WP_057032715.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| H5A01_RS00490 (H5A01_00490) | pglE | 96692..97852 (+) | 1161 | WP_052785356.1 | UDP-N-acetylbacillosamine transaminase | - |
| H5A01_RS00495 (H5A01_00495) | pglF | 97854..99626 (+) | 1773 | WP_167843143.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| H5A01_RS00500 (H5A01_00500) | pglG | 99626..100519 (+) | 894 | WP_167843142.1 | PDC sensor domain-containing protein | - |
Sequence
Protein
Download Length: 314 a.a. Molecular weight: 36096.73 Da Isoelectric Point: 10.3770
>NTDB_id=472752 H5A01_RS00345 WP_002844797.1 63863..64807(-) (waaF) [Campylobacter jejuni strain C1922C72]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT
Nucleotide
Download Length: 945 bp
>NTDB_id=472752 H5A01_RS00345 WP_002844797.1 63863..64807(-) (waaF) [Campylobacter jejuni strain C1922C72]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
82.748 |
99.682 |
0.825 |