Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K07_RS20820 Genome accession   NZ_CP070103
Coordinates   4321893..4323317 (+) Length   474 a.a.
NCBI ID   WP_085004667.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1277     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4316893..4328317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K07_RS23305 - 4317566..4318168 (+) 603 WP_311042320.1 phage N-6-adenine-methyltransferase -
  I6K07_RS20775 (I6K07_20775) - 4318165..4318383 (+) 219 Protein_4097 hypothetical protein -
  I6K07_RS20780 (I6K07_20780) - 4318380..4318601 (+) 222 WP_136008487.1 hypothetical protein -
  I6K07_RS20785 (I6K07_20785) - 4318693..4318908 (+) 216 WP_071684197.1 TraR/DksA family transcriptional regulator -
  I6K07_RS20790 (I6K07_20790) - 4318908..4319405 (+) 498 WP_085004663.1 class I SAM-dependent methyltransferase -
  I6K07_RS20795 (I6K07_20795) - 4319383..4319622 (+) 240 WP_085004673.1 DUF4222 domain-containing protein -
  I6K07_RS20800 (I6K07_20800) - 4319668..4319952 (+) 285 Protein_4102 DUF550 domain-containing protein -
  I6K07_RS20805 (I6K07_20805) - 4320150..4320350 (+) 201 WP_085004665.1 hypothetical protein -
  I6K07_RS20810 (I6K07_20810) - 4320361..4320552 (+) 192 WP_028018495.1 AlpA family phage regulatory protein -
  I6K07_RS20815 (I6K07_20815) - 4320533..4321711 (-) 1179 WP_085004666.1 site-specific integrase -
  I6K07_RS20820 (I6K07_20820) sbcB 4321893..4323317 (+) 1425 WP_085004667.1 exodeoxyribonuclease I Machinery gene
  I6K07_RS20825 (I6K07_20825) tsuB 4323360..4323587 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6K07_RS20830 (I6K07_20830) tsuA 4323601..4324659 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  I6K07_RS20835 (I6K07_20835) plaP 4324838..4326196 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6K07_RS20840 (I6K07_20840) yoeI 4326186..4326248 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6K07_RS20845 (I6K07_20845) yeeY 4326463..4327392 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6K07_RS20850 (I6K07_20850) yeeZ 4327438..4328262 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54365.63 Da        Isoelectric Point: 5.2440

>NTDB_id=472749 I6K07_RS20820 WP_085004667.1 4321893..4323317(+) (sbcB) [Escherichia coli strain FDAARGOS_1277]
MADTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=472749 I6K07_RS20820 WP_085004667.1 4321893..4323317(+) (sbcB) [Escherichia coli strain FDAARGOS_1277]
ATGGCAGACACAGATAAACAACCTACCTTCCTATTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584