Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6L00_RS11180 Genome accession   NZ_CP070098
Coordinates   2183404..2184831 (+) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1370     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178404..2189831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L00_RS11140 (I6L00_11100) yeeW 2178588..2178782 (+) 195 WP_000988600.1 DUF5983 family protein -
  I6L00_RS11145 (I6L00_11105) - 2178828..2178908 (+) 81 Protein_2073 hypothetical protein -
  I6L00_RS26145 (I6L00_11110) - 2179197..2179370 (-) 174 WP_032082634.1 transposase domain-containing protein -
  I6L00_RS26150 (I6L00_11115) - 2179397..2179579 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6L00_RS11160 (I6L00_11120) tmaR 2179680..2180009 (-) 330 WP_000450409.1 DUF496 family protein -
  I6L00_RS11165 (I6L00_11125) yeeA 2180181..2181239 (-) 1059 WP_001200890.1 FUSC family protein -
  I6L00_RS11170 (I6L00_11130) sbmC 2181437..2181910 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  I6L00_RS11175 (I6L00_11135) dacD 2182029..2183195 (-) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6L00_RS11180 (I6L00_11140) sbcB 2183404..2184831 (+) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  I6L00_RS11185 (I6L00_11145) tsuB 2184874..2185101 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6L00_RS11190 (I6L00_11150) tsuA 2185115..2186173 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  I6L00_RS11195 (I6L00_11155) plaP 2186352..2187711 (-) 1360 Protein_2083 putrescine/proton symporter PlaP -
  I6L00_RS11200 (I6L00_11160) yoeI 2187701..2187763 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6L00_RS11205 (I6L00_11165) yeeY 2187978..2188907 (-) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  I6L00_RS11210 (I6L00_11170) yeeZ 2188953..2189777 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=472613 I6L00_RS11180 WP_021523141.1 2183404..2184831(+) (sbcB) [Escherichia coli strain FDAARGOS_1370]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=472613 I6L00_RS11180 WP_021523141.1 2183404..2184831(+) (sbcB) [Escherichia coli strain FDAARGOS_1370]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581