Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | R2866_RS00700 | Genome accession | NC_017451 |
| Coordinates | 140561..140974 (+) | Length | 137 a.a. |
| NCBI ID | WP_005649303.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae R2866 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 135561..145974
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2866_RS00680 (R2866_0135) | - | 136049..138643 (-) | 2595 | WP_005649307.1 | penicillin-binding protein 1A | - |
| R2866_RS00685 (R2866_0136) | comA | 138742..139539 (+) | 798 | WP_005649306.1 | pilus assembly protein PilM | Machinery gene |
| R2866_RS00690 (R2866_0137) | comB | 139540..140046 (+) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| R2866_RS00695 (R2866_0138) | comC | 140043..140564 (+) | 522 | WP_005649304.1 | competence protein ComC | Machinery gene |
| R2866_RS00700 (R2866_0139) | comD | 140561..140974 (+) | 414 | WP_005649303.1 | pilus assembly protein PilP | Machinery gene |
| R2866_RS00705 (R2866_0140) | comE | 140984..142321 (+) | 1338 | WP_005649302.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| R2866_RS00710 (R2866_0141) | - | 142334..143020 (+) | 687 | WP_005649301.1 | ComF family protein | - |
| R2866_RS00715 (R2866_0142) | nfuA | 143096..143692 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| R2866_RS00720 (R2866_0143) | nudC | 143759..144553 (+) | 795 | WP_005666520.1 | NAD(+) diphosphatase | - |
| R2866_RS00725 (R2866_0144) | - | 144589..145179 (+) | 591 | WP_005649296.1 | YjaG family protein | - |
| R2866_RS00730 (R2866_0145) | - | 145319..145591 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15700.86 Da Isoelectric Point: 4.7132
>NTDB_id=47251 R2866_RS00700 WP_005649303.1 140561..140974(+) (comD) [Haemophilus influenzae R2866]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEHRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGIDVAQEGYIVEKINQNNVQFIRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEHRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGIDVAQEGYIVEKINQNNVQFIRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=47251 R2866_RS00700 WP_005649303.1 140561..140974(+) (comD) [Haemophilus influenzae R2866]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAACATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATTCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAACATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATTCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
97.81 |
100 |
0.978 |
| comD | Haemophilus influenzae 86-028NP |
97.08 |
100 |
0.971 |