Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H5C80_RS19490 Genome accession   NZ_CP059907
Coordinates   3933026..3933655 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 181.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3928026..3938655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5C80_RS19475 (H5C80_19475) helD 3928268..3930322 (-) 2055 WP_001317751.1 DNA helicase IV -
  H5C80_RS19480 (H5C80_19480) yccF 3930445..3930891 (+) 447 WP_001261236.1 YccF domain-containing protein -
  H5C80_RS19485 (H5C80_19485) yccS 3930901..3933063 (+) 2163 WP_000875041.1 YccS family putative transporter -
  H5C80_RS19490 (H5C80_19490) sxy/tfoX 3933026..3933655 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H5C80_RS19495 (H5C80_19495) sulA 3933874..3934383 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  H5C80_RS19500 (H5C80_19500) ompA 3934740..3935780 (+) 1041 WP_001314606.1 porin OmpA -
  H5C80_RS19505 (H5C80_19505) matP 3935856..3936308 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H5C80_RS19510 (H5C80_19510) ycbZ 3936494..3938254 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=472464 H5C80_RS19490 WP_000839153.1 3933026..3933655(-) (sxy/tfoX) [Escherichia coli strain 181.1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=472464 H5C80_RS19490 WP_000839153.1 3933026..3933655(-) (sxy/tfoX) [Escherichia coli strain 181.1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1