Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K17_RS04390 Genome accession   NZ_CP070071
Coordinates   775219..776646 (-) Length   475 a.a.
NCBI ID   WP_075051297.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1287     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 770219..781646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K17_RS04360 (I6K17_04360) yeeZ 770274..771098 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I6K17_RS04365 (I6K17_04365) yeeY 771144..772073 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6K17_RS04370 (I6K17_04370) yoeI 772288..772350 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6K17_RS04375 (I6K17_04375) plaP 772340..773698 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6K17_RS04380 (I6K17_04380) tsuA 773877..774935 (+) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  I6K17_RS04385 (I6K17_04385) tsuB 774949..775176 (+) 228 WP_063116139.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6K17_RS04390 (I6K17_04390) sbcB 775219..776646 (-) 1428 WP_075051297.1 exodeoxyribonuclease I Machinery gene
  I6K17_RS04395 (I6K17_04395) dacD 776855..778021 (+) 1167 WP_063116138.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K17_RS04400 (I6K17_04400) sbmC 778140..778613 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  I6K17_RS04405 (I6K17_04405) yeeA 778811..779869 (+) 1059 WP_001200905.1 FUSC family protein -
  I6K17_RS04410 (I6K17_04410) tmaR 780041..780370 (+) 330 WP_000450409.1 DUF496 family protein -
  I6K17_RS04415 (I6K17_04415) - 780471..780653 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6K17_RS27630 - 780773..780853 (+) 81 WP_023441679.1 hypothetical protein -
  I6K17_RS04425 (I6K17_04425) - 781142..781222 (-) 81 Protein_748 hypothetical protein -
  I6K17_RS04430 (I6K17_04430) yeeW 781268..781462 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54438.74 Da        Isoelectric Point: 5.4700

>NTDB_id=472429 I6K17_RS04390 WP_075051297.1 775219..776646(-) (sbcB) [Escherichia coli strain FDAARGOS_1287]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=472429 I6K17_RS04390 WP_075051297.1 775219..776646(-) (sbcB) [Escherichia coli strain FDAARGOS_1287]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585