Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K26_RS09600 Genome accession   NZ_CP070066
Coordinates   1998238..1999665 (-) Length   475 a.a.
NCBI ID   WP_000980617.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1296     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993238..2004665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K26_RS09565 (I6K26_09565) hisL 1993822..1993872 (-) 51 WP_001364200.1 his operon leader peptide -
  I6K26_RS09570 (I6K26_09570) yefM 1994155..1994406 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6K26_RS09575 (I6K26_09575) yoeB 1994403..1994657 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6K26_RS09580 (I6K26_09580) yeeZ 1994740..1995564 (+) 825 WP_000754733.1 SDR family oxidoreductase -
  I6K26_RS09585 (I6K26_09585) yeeY 1995610..1996539 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  I6K26_RS09590 (I6K26_09590) yoeI 1996754..1996816 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6K26_RS09595 (I6K26_09595) plaP 1996806..1998164 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  I6K26_RS09600 (I6K26_09600) sbcB 1998238..1999665 (-) 1428 WP_000980617.1 exodeoxyribonuclease I Machinery gene
  I6K26_RS09605 (I6K26_09605) dacD 1999874..2001039 (+) 1166 Protein_1891 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K26_RS09610 (I6K26_09610) sbmC 2001158..2001631 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6K26_RS09615 (I6K26_09615) yeeA 2001829..2002887 (+) 1059 WP_001200890.1 FUSC family protein -
  I6K26_RS09620 (I6K26_09620) tmaR 2003059..2003388 (+) 330 WP_000450409.1 DUF496 family protein -
  I6K26_RS09625 (I6K26_09625) - 2003489..2003671 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6K26_RS09630 (I6K26_09630) - 2003725..2003871 (+) 147 Protein_1896 transposase domain-containing protein -
  I6K26_RS09635 (I6K26_09635) - 2004160..2004240 (-) 81 Protein_1897 hypothetical protein -
  I6K26_RS09640 (I6K26_09640) yeeW 2004286..2004480 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54541.87 Da        Isoelectric Point: 5.6114

>NTDB_id=472378 I6K26_RS09600 WP_000980617.1 1998238..1999665(-) (sbcB) [Escherichia coli strain FDAARGOS_1296]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=472378 I6K26_RS09600 WP_000980617.1 1998238..1999665(-) (sbcB) [Escherichia coli strain FDAARGOS_1296]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCAGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581